Public Datasets

DatasetID: 101 Name: MAPPS_2022_main Last Update: 2024-10-04

Drop-Seq of Mouse Sensory and Sympathetic Peripheral Ganglia - All Cells

Drop-Seq of mouse sensory and sympathetic peripheral ganglia from Mapps et al., 2022 Cell Reports.

  • Species: Mouse
  • Platform: Drop-Seq
  • Tissue: Peripheral Ganglia
  • Isolation Type: Single Cell
  • Sequencing Platform: Illumina
  • Individual Runs: DRG: 11 SCG: 5
  • GEO Link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE175421
  • DOI Link: https://doi.org/10.1016/j.celrep.2022.110328
DatasetID: 102 Name: MAPPS_2022_glia Last Update: 2024-10-04

Drop-seq of Mouse Sensory and Sympathetic Peripheral Ganglia - Glial Cells Only

Glia subset of Mapps et al., 2022 Cell Reports. Parent dataset MAPPS_2022_main.

  • Species: Mouse
  • Platform: Drop-Seq
  • Tissue: Peripheral Ganglia
  • Isolation Type: Single Cell
  • Sequencing Platform: Illumina
  • Individual Runs: DRG: 11 SCG: 5
  • GEO Link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE175421
  • DOI Link: https://doi.org/10.1016/j.celrep.2022.110328

Analysis Results

Getting Started

Welcome to Single Cell Browser! Here's how to get started:

  1. Browse available datasets on the Home page
  2. Click on a dataset to view details and downloadable data
  3. Use the Gene Expression Viewer to visualize expression patterns
  4. Perform GO Enrichment analysis on gene sets of interest

Gene Expression Viewer

To use the Gene Expression Viewer:

  1. Select a dataset from the dropdown menu
  2. Enter a gene symbol (case-sensitive)
  3. Adjust plot options as needed
  4. Click "Plot" to generate the visualization

GO Enrichment Tool

For GO Enrichment analysis:

  1. Choose between custom gene list or file selection
  2. Enter genes or select a file with differentially expressed genes
  3. Set analysis parameters
  4. Submit the analysis and view results in the Results tab

Tips

  • Use the split plot option to compare expression across metadata fields
  • Try the coexpression plot to visualize two genes simultaneously
  • Click on help icons (?) for additional information on specific features

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